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Sourdough Carrot Cupcakes with Cream Cheese Frosting

These sourdough carrot cupcakes with cream cheese frosting are a new way to enjoy carrot cake. They make a great snack and are perfect for a family get-together. This, and my other sourdough discard recipes, will quickly become favorites.

Sourdough Carrot Cupcakes

Using discard sourdough starter, these carrot cupcakes are sweet and moist, topped with a delicious and simple cream cheese frosting.  No sourdough taste!
Prep Time 30 minutes
Cook Time 25 minutes
Total Time 55 minutes
Serving Size 26 cupcakes

Equipment

  • 12-cup Cupcake pans
  • Cupcake liners
  • Mixer (stand mixer or hand mixer)
  • Large mixing bowl
  • Wire rack

Ingredients

Carrot Cake

  • 1 ½ cup vegetable oil
  • 2 cups white sugar
  • 1 cup sourdough starter (discard/ unfed)
  • 3 eggs
  • 1 cup canned crushed pineapple (drained, about 8 oz)
  • 2 cups carrots (grated, about 4 medium carrots)
  • ½ cup golden raisins
  • 2 teaspoons vanilla
  • 2 ½ cups all purpose flour
  • 2 teaspoons cinnamon
  • ¼ teaspoon allspice
  • ½ teaspoon salt
  • 1 teaspoon baking soda

Cream Cheese Frosting

  • 8 ounces cream cheese (room temperature)
  • 12 ounces butter (melted)
  • 4 cups powdered sugar
  • pinch salt (if using unsalted butter)
  • 3 teaspoons vanilla
  • 2 tablespoons milk or cream (if icing is too thick)

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Instructions

For the Cupcakes:

  • Preheat the oven. Preheat the oven to 350°F (175°C) and line the muffin pans with cupcake liners. This recipe yields 24 very full cupcakes or 26 smaller ones.
  • Mix the wet ingredients. Combine the vegetable oil and white sugar in a large mixing bowl. Then, beat well until fully combined and creamy. Next, add the sourdough starter discard and gently mix it into the batter. Add the eggs one at a time, beating well after each addition. Stir in the vanilla extract.
  • Add the carrots, pineapple, and raisins. Reduce your mixer speed to low and gently fold in the grated carrots, drained pineapple, and golden raisins until evenly distributed throughout the batter.
  • Prepare the dry ingredients. In a separate large bowl, whisk together the flour, cinnamon, allspice, salt, and baking soda. Gradually add the dry ingredients to the wet ingredients 1 cup at a time, mixing gently after each addition until just combined. Be careful not to overmix.
  • Fill and bake. Divide the batter evenly among the prepared cupcake liners. Fill to about ⅔ full. Bake for 25 minutes, or until the tops are lightly bouncy when pressed.
  • Cool the cupcakes. Cool in the pan for a few minutes before moving them to a wire rack to cool completely before frosting.

For the Cream Cheese Frosting:

  • Beat the cream cheese and butter. Using a stand or hand mixer, beat the room temperature cream cheese and melted butter on medium speed until smooth and creamy. It may appear lumpy at first, but continue beating until fully combined.
  • Add the vanilla and salt. Mix in the vanilla extract. If you're using unsalted butter, add a pinch of salt. Otherwise, skip the salt.
  • Add the powdered sugar. Gradually add the powdered sugar, one cup at a time, starting on low speed to prevent a sugar cloud, then increasing the speed until the frosting is smooth and creamy.
  • Adjust the consistency. If the frosting is too thick, add milk or cream, one teaspoon at a time, until the desired consistency is reached. If it becomes too thin, refrigerate the frosting for 30 minutes before using.
  • Frost the cupcakes: Once the cupcakes are completely cooled, generously frost them using a piping bag or a spatula.

Video

Notes

  • To make a cake instead, mix evenly into two 8-inch cake pans and bake for about 45 minutes, checking with a cake tester to make sure it’s done.

Tips for Success:

Keep your cupcake liners about ⅔ full. These rise quite a bit, and overfilling will give you flat tops that spill over.

The tops should spring back when lightly touched. If your finger leaves a dent, it needs more time.

Let the cupcakes cool all the way before frosting. Even slightly warm cupcakes will melt your frosting.

Make sure your cream cheese is truly at room temperature, and let your melted butter cool slightly before mixing them together.

Grate your own carrots instead of using pre-shredded ones. The fresh moisture makes a big difference.

sourdough carrot cupcake with cream cheese frosting resting on on towel

Ingredients and Tools

Sourdough discard: Cold from the fridge is fine – it doesn’t need to be recently fed or at room temperature.

Vegetable oil: This keeps your cupcakes moist.

Carrots: Fresh, medium-sized carrots that you grate yourself work best. They have more moisture than pre-packaged shredded carrots.

Crushed pineapple: Drain it in a strainer, but don’t press out all the juice. You want some moisture to remain.

Golden raisins: These are milder than dark raisins. If you only have dark raisins, soak them in hot water for 10 minutes and drain before using.

sourdough carrot cupcake with bite taken out

Mixer: A stand mixer or hand mixer makes the frosting much easier, though you could mix by hand if needed.

Cupcake pans: Either light or dark metal pans work well. Dark pans give a slightly crispier edge.

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Troubleshooting and Help

Can I substitute whole wheat flour for the all-purpose flour?

You can, but remember that whole wheat flour will make the cupcakes denser and may give them a slightly nutty flavor. If you want to try it, I’d suggest using half whole wheat and half all-purpose flour to keep the texture nice and light.

Can I skip the golden raisins if I don’t like them?

If you’re not a fan of golden raisins, feel free to leave them out or replace them with something you like, such as chopped nuts, dried cranberries, or even a handful of shredded coconut.

My cupcakes didn’t rise much—what went wrong?

That can happen if your baking soda is old or the batter is overmixed. Make sure your baking soda is fresh (less than six months old), and stir just until the ingredients are combined. Overmixing can knock out the air and make the cupcakes dense.

My cream cheese frosting turned out too soft—what can I do?

That happens if the butter was too warm when you started. Put the frosting in the fridge for 15-20 minutes to let it firm up, then stir it before frosting the cupcakes.

What if I don’t like cream cheese frosting?

Try a simple buttercream, a lemon glaze, my vanilla cream filling on top, or dust the tops with powdered sugar for a lighter option.

Serving & Storage

Serve these cupcakes with coffee or tea, fresh fruit, vanilla ice cream, or chicken salad croissant sandwiches.

  • Room Temperature: Store cupcakes without frosting at room temperature in a container for 2 days.
  • Fridge: Store cupcakes with frosting in the fridge in a container for 5 days.
  • Freezer: Store cupcakes without frosting in the freezer by wrapping each in plastic wrap and putting them in a freezer bag or sealed container for up to 1 month.

These cupcakes are a simple and delicious way to use up your discard. I hope they become a favorite in your home like they are in mine.

carrot cupcakes on wooden bread board with plates nearby
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By Katie Shaw

Katie lives in Virginia with her husband, three daughters, a chocolate lab, and over thirty chickens. She loves creating simple tutorials for sourdough, bread, and soap. Her recipes, articles, and YouTube videos reach millions of people per year.

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Recipe Rating




35 Comments

  1. 5 stars
    I made this as a cake and used a buttermilk glaze instead of cream cheese frosting. The cake is moist, delicious and a great use of my unfed starter!

  2. 5 stars
    So so so yummy. I substituted a mix of half vegetable shortening and half butter, and used1 cup sourdough starter instead of half. Put the nuts raisins coconut and walnuts as well. For the icing I used vanilla bean paste and only three cups sugar. I just cannot seem to follow a recipe, but it ended up making 24 cupcakes and a 9X9 pan of cake.

    1. your changes sound delicious! i actually love baking with shortening too. I’m so happy you liked the cupcakes

  3. 5 stars
    5 Stars! I didn’t have canned pineapple on hand, so subbed with unsweetened apple sauce. Only made half the amount of frosting (based on the icing sugar I had in my cupboard) and that was the perfect amount (although I could easily eat the frosting by the spoonful). Thanks for sharing this lovely recipe!!

    1. Aw thank you for the comment Tina! So great to know about the applesauce because I often don’t hav thee pineapple on hand either! 🙂

    1. I have never tried it but if you have a substitution that works in other cake recipes I don’t see why not

  4. 5 stars
    DELICIOUS!
    I only used 1 cup of sugar and left them unfrosted – I was looking for carrot muffin recipe when I stumbled upon this one. SO good – a definite keeper!

  5. 5 stars
    Because of health issues, I had to go dairy and gluten free. This has been a hard transition for me AND my family. Finding a recipe that tastes just as good as we were accustomed to is difficult, to say the least. I made these cupcakes for Easter with a GF flour mix. They turned out so good! The cakes were moist, decadent and delicious. Even my dad requested to take some home with him. (That was such a compliment to me!) The recipe makes quite a few cupcakes so you can freeze some for later. A few weeks after Easter, my parents came over for dinner. Dad was so happy when I pulled out a few cupcakes and heated them up. Definitely a keeper!

    1. that is so wonderful to hear Amy! I am so happy to hear a gluten free mix worked out well with the recipe! ????

  6. I made these with my cup for cup gluten free flour and they turned out too oily and crumbly , sorry don’t know if I could only use normal flour and also normal sour dough starter . Please help as was not very nice turn out

  7. My kiddos are sensitive to pineapples. Would you have any suggestions to replace this item? Is it necessary? This recipe sounds and looks delicious

    1. I would just leave it out. you could try applesauce but I think it might make the batter too wet. they’ll be fine without the pineapple 🙂

    2. 4 stars
      We used canned peach instead and it turned out great. Also subbed all butter/oils with coconut oil, icing was way too much for us so definitely would make half in the future.

  8. THESE WERE AWESOME!! My family loves them too! I made these yesterday, and now there are only 6 left! This recipe made 24 cupcakes and 4 small ramikin cakes. Love the addition of raisins and pineapple. It made these almost healthy!! And the frosting recipe makes A LOT of frosting. I had to freeze half of it to use later!

  9. This recipe looks fantastic, but 12 oz of butter seems to be a LOT of butter for the frosting.

    1. I know, doesn’t it! but its delicious! (it also makes a very large volume of frosting which is part of why that looks like so much!)

  10. 5 stars
    I’m not a huge carrot cake fan, but I tried this recipe because I had lots of carrots and lots of sourdough. I used gluten free sourdough and flour, and applesauce instead of pineapple. They turned out moist and light, not too sweet, and the spice was perfect. These are not just the best carrot cake cupcakes I’ve ever had, these are the best CUPCAKES I’ve ever had. ???? I’ve shared the recipe with quite a few friends already, but my family wasn’t interested in sharing the cupcakes with friends.

    1. yes, it can definitely be reduced. with the recipe as written it tastes like a true dessert/ cake. if you reduce it its more muffiny but still very good

  11. Oh my goodness!! This sounds absolutely delicious!!! I love sourdough, carrot cake, and cream cheese frosting! Great baking tips as well!

    1. This is such perfect timing! I started a new sourdough starter today and was thinking that I should start looking up some good recipes to utilize the “discarded” portions!